Manitoba species at risk → NCBI assembly inventory

Generated 2026-06-03 · 79 species from two sources: Manitoba ESEA Regulation 25/98 (provincially-listed Threatened / Endangered / Extirpated) plus federal SARA Schedule 1 rows whose population qualifier names an MB-relevant geography (Manitoba, Saskatchewan, Hudson Bay, Prairie, Boreal, …). 63 ESEA-only · 14 SARA-population-only · 2 on both lists. Per-species sequence-resource lookup via the NCBI Datasets v2 API and Entrez E-utilities.

A Assembled WGS · 25 (32%) B Unassembled WGS (SRA reads) · 11 (14%) C Transcriptome (TSA/EST/RNA-Seq) · 5 (6%) D Marker / mitochondrion only · 16 (20%) E No usable public sequence · 22 (28%)

Tier	Species	Taxon group	Status	Assembly level	Accession	Length	SRA WGS	Transcriptome	nuccore
A	Agalinis gattingeri Gattinger's Agalinis	Plants	Endangered	Scaffold	GCA_056108485.1	515 Mb
A	Antilocapra americana Pronghorn	Mammals	Extirpated	Scaffold	GCA_051176615.2	2.57 Gb
A	Apodemia mormo Metalmark, Mormon ↳ Prairie population	Arthropods	Special Concern	Scaffold	GCA_036924255.1	1.14 Gb
A	Athene cunicularia Burrowing Owl	Birds	Endangered	Scaffold	GCF_003259725.1	1.16 Gb
A	Bison bison bison Plains Bison	Mammals	Extirpated	Scaffold	GCF_000754665.1	2.83 Gb
A	Buteo regalis Ferruginous Hawk	Birds	Endangered	Scaffold	GCA_037951015.2	1.27 Gb
A	Calcarius ornatus Chestnut-collared Longspur	Birds	Endangered	Scaffold	GCA_013397715.1	1.06 Gb
A	Chaetura pelagica Chimney Swift	Birds	Threatened	Scaffold	GCF_000747805.2	1.12 Gb
A	Cygnus buccinator Trumpeter Swan	Birds	Endangered	Scaffold	GCA_055268985.1	1.13 Gb
A	Falco peregrinus Peregrine Falcon	Birds	Endangered	Chromosome	GCF_023634155.1	1.31 Gb
A	Grus americana Whooping Crane	Birds	Endangered	Chromosome	GCF_028858705.1	1.26 Gb
A	Hesperia dacotae Dakota Skipper	Insects	Threatened	Scaffold	GCA_055049015.1	607 Mb
A	Lanius ludovicianus Loggerhead Shrike	Birds	Endangered	Scaffold	GCA_013397235.1	1.04 Gb
A	Lithobates pipiens Frog, Northern Leopard ↳ Western Boreal/Prairie populations	Amphibians	Special Concern	Chromosome	GCA_037367395.2	5.87 Gb
A	Myotis lucifugus Little Brown Bat	Mammals	Endangered	Chromosome	GCA_048340685.1	2.06 Gb
A	Odocoileus hemionus Mule Deer	Mammals	Threatened	Chromosome	GCA_020976825.1	2.61 Gb
A	Ovibos moschatus Muskox	Mammals	Extirpated	Scaffold	GCA_041156055.1	2.60 Gb
A	Pagophila eburnea Ivory Gull	Birds	Endangered	Scaffold	GCA_982554315.1	1.21 Gb
A	Rangifer tarandus Caribou ↳ Boreal population	Mammals	Threatened	Chromosome	GCA_949782905.1	2.97 Gb
A	Rangifer tarandus caribou Woodland Caribou (boreal) ↳ Northern Mountain population	Mammals	Threatened	Chromosome	GCA_019903745.2	2.58 Gb
A	Rhodostethia rosea Ross's Gull	Birds	Endangered	Scaffold	GCA_982553725.1	1.25 Gb
A	Teloschistes chrysophthalmus Lichen, Golden-eye ↳ Prairie / Boreal population	Lichens	Special Concern	Scaffold	GCA_051940965.1	26 Mb
A	Tympanuchus cupido Greater Prairie Chicken	Birds	Extirpated	Scaffold	GCA_001870855.1	984 Mb
A	Ursus arctos Grizzly Bear	Mammals	Extirpated	Chromosome	GCF_023065955.2	2.42 Gb
A	Ursus maritimus Polar Bear	Mammals	Threatened	Scaffold	GCF_017311325.1	2.33 Gb
B	Ambystoma tigrinum Salamander, Eastern Tiger ↳ Prairie population	Amphibians	Endangered				2	1
B	Asio flammeus Short-eared Owl	Birds	Threatened				3	1	64
B	Cardellina canadensis Canada Warbler	Birds	Threatened				37		390
B	Chenopodium subglabrum Smooth Goosefoot	Plants	Endangered				1
B	Contopus cooperi Olive-sided Flycatcher	Birds	Threatened				2		31
B	Ictiobus cyprinellus Buffalo, Bigmouth ↳ Saskatchewan – Nelson River populations	Fish	Special Concern				25	1	122
B	Myotis septentrionalis Northern Long-eared Bat	Mammals	Endangered				1
B	Oarisma poweshiek Poweshiek Skipperling	Insects	Endangered				1
B	Psilocarphus brevissimus Woolly-heads, Dwarf ↳ Prairie population	Plants	Special Concern				2
B	Vermivora chrysoptera Golden-winged Warbler	Birds	Threatened				52		247
B	Wilsonia canadensis Canada Warbler	Birds	Endangered				37
C	Acipenser fulvescens Sturgeon, Lake ↳ Southern Hudson Bay – James Bay populations	Fish	Special Concern					226	599
C	Bufo cognatus Great Plains Toad	Amphibians	Threatened					2	54
C	Celtis occidentalis Common Hackberry	Plants	Threatened					1
C	Heterodon nasicus Western Hognose Snake	Reptiles	Threatened					1	50
C	Quadrula quadrula Mapleleaf Mussel ↳ Saskatchewan – Nelson Rivers population	Molluscs	Endangered					6
D	Ambystoma mavortium Salamander, Western Tiger ↳ Prairie/Boreal population	Amphibians	Special Concern						282
D	Ammodramus bairdii Baird's Sparrow	Birds	Endangered						17
D	Anthus spragueii Sprague's Pipit	Birds	Threatened						25
D	Chordeiles minor Common Nighthawk	Birds	Threatened						31
D	Cypripedium candidum Small White Lady's-slipper	Plants	Endangered						19
D	Dalea villosa Hairy Prairie-clover	Plants	Threatened						1
D	Hesperia ottoe Ottoe Skipper	Insects	Threatened						2
D	Hesperia uncas Uncas Skipper	Insects	Endangered						1
D	Numenius americanus Long-billed Curlew	Birds	Extirpated						7
D	Pellaea gastonyi Gastony's Cliffbrake	Plants	Endangered						3
D	Platanthera praeclara Western Prairie Fringed-orchid	Plants	Endangered						6
D	Schinia verna Verna's Flower Moth	Insects	Endangered						2
D	Symphyotrichum sericeum Western Silvery Aster	Plants	Threatened						19
D	Vernonia fasciculata Western Ironweed	Plants	Endangered						14
D	Veronicastrum virginicum Culver's-root	Plants	Threatened						19
D	Vulpes velox Swift Fox	Mammals	Extirpated						41
E	Aflexia rubranura Leafhopper, Red-tailed ↳ Prairie population	Arthropods	Special Concern
E	Agalinis aspera Rough Agalinis	Plants	Endangered
E	Buchloë dactyloides Buffalograss	Plants	Threatened
E	Calidris canutus rufa Red Knot (rufa subspecies)	Birds	Endangered
E	Caprimulgus vociferus Whip-poor-will	Birds	Threatened
E	Charadrius melodus Piping Plover	Birds	Endangered
E	Copablepharon grandis Pale Yellow Dune Moth	Insects	Endangered
E	Copablepharon longipenne Dusky Dune Moth	Insects	Endangered
E	Erioderma pedicallatum Lichen, Boreal Felt ↳ Boreal population	Lichens	Special Concern
E	Erynnis martialis Duskywing, Mottled ↳ Boreal population	Arthropods	Endangered
E	Ixobrychus exilis Least Bittern	Birds	Endangered
E	Melanerpes erythrocephalus Red-headed Woodpecker	Birds	Threatened
E	Neominois ridingsii Riding's Satyr	Insects	Extirpated
E	Numenius borealis Eskimo Curlew	Birds	Endangered
E	Plestiodon septentrionalis Prairie Skink	Reptiles	Endangered
E	Salvelinus confluentus Trout, Bull ↳ Saskatchewan – Nelson Rivers populations	Fish	Threatened
E	Schinia avemensis Gold-edged Gem	Insects	Endangered
E	Schinia bimatris White Flower Moth	Insects	Endangered
E	Solidago riddellii Riddell's Goldenrod	Plants	Threatened
E	Solidago speciosa Goldenrod, Showy ↳ Boreal population	Plants	Threatened
E	Spiranthes magnicamporum Great Plains Ladies'-tresses	Plants	Endangered
E	Tradescantia occidentalis Western Spiderwort	Plants	Threatened

Tier

Species

Taxon group

Status

Assembly level

Accession

Length

SRA WGS

Transcriptome

nuccore

Agalinis gattingeri
Gattinger's Agalinis

Plants